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Introduction
What is PONDEROSA-C/S?
What makes it so innovative?
Side-by-side comparisons
Programs
Ponderosa Client
Ponderosa Server
Ponderosa Analyzer
Ponderosa Violation Investigator
Download
Examples
An example set for demonstration
For Users
For Administrators
Contact
User Group
Email Contact
Screen Shots
Video Tutorials
Web Servers
PONDEROSA-C/S Web Server
PONDEROSA Prediction Server
NMRFAM
ADAPT-NMR
ADAPT-NMR Enhancer
ARECA
I-PINE Web Server
LACS
NEWTON
PACSY
PACSY-ALIGN
PONDEROSA
PINE-SPARKY
PINE-SPARKY.2
RNA-PAIRS
rNMR
RUNER Web Server
NMRFAM-SPARKY
Software Downloads
PONDEROSA-C/S
offers a fast and easy way to determine protein 3D structures!
Ponderosa Web Server
is
[on]
for external users for free.
PONDEROSA-C/S is freely available for all academic users.
[Click here to request NMRFAM PONDEROSA-C/S account for collaborative projects]
[Click here to read "Become an NMRFAM Collaborator"]
Reference:
Lee W, Petit CM, Cornilescu G, Stark JL, Markley JL. (2016) The AUDANA algorithm for automated protein 3D structure determination from NMR NOE data. Journal of Biomolecular NMR 65(2):51-57
AUDANA automation and/or PONDEROSA-X refinement
Lee W, Cornilescu G, Dashti H, Eghbalnia HR, Tonelli M, Westler WM, Butcher SE, Wildman-Henzler K, Markley JL. (2016) Integrative NMR for biomolecular research.
Journal of Biomolecular NMR 64(4):307-332
NMRFAM-SPARKY
and/or Ponderosa Analyzer and/or
Ponderosa Prediction Server
and/or Video Tutorials
Lee W, Stark JL, Markley JL. (2014) PONDEROSA-C/S: Client-server based software package for automated protein 3D structure determination.
Journal of Biomolecular NMR 60(2-3):73-5
Any software related to the PONDEROSA-C/S package
Lee W, Kim JH, Westler WM, Markley JL (2011) PONDEROSA, an automated 3D-NOESY peak picking program, enables automated protein structure determination. Bioinformatics 27: 1727–1728
PONDEROSA peak picking module (two-letter-code
c3
) in the
NMRFAM-SPARKY
Last Updated: October 26, 2018
