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 Image Map Welcome to NMRFAM Ponderosa Prediction Server (POND-PRED). (beta)

Please copy & paste your FASTA sequence below with your email address.
You will get results to the email address.

Process time varies depending on protein size (a few minutes to hours).

The Ponderosa Prediction Server (POND-PRED) generates NMR structure-like models by use of distance and angle restraints generated from PACSY database along with Ponderosa Server calculation.

The Ponderosa Analyzer can be used to examine the results. [click to download]

Your Name:
P.I. Name:
Institution:
Email:

First Index:
FASTA sequence: (up to 999 a.a.)



* Check your running jobs here.
Your E-mail:



Reference:

    1. Lee W, Petit CM, Cornilescu G, Stark JL, Markley JL. (2016) The AUDANA algorithm for automated protein 3D structure determination from NMR NOE data. Journal of Biomolecular NMR. in press
    2. Lee W, Cornilescu G, Dashti H, Eghbalnia HR, Tonelli M, Westler WM, Butcher SE, Wildman-Henzler K, Markley JL. (2016) Integrative NMR for biomolecular research. Journal of Biomolecular NMR 64(4):307-332
    3. Lee W, Stark JL, Markley JL. (2014) PONDEROSA-C/S: Client-server based software package for automated protein 3D structure determination. Journal of Biomolecular NMR  60(2-3):73-5
    4. Lee W, Kim JH, Westler WM, Markley JL (2011) PONDEROSA, an automated 3D-NOESY peak picking program, enables automated protein structure determination. Bioinformatics 27: 1727–1728

    Last Updated: May 9, 2016
    By Woonghee Lee (whlee@nmrfam.wisc.edu)


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